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How to convert PDB (Protein Database) to CADMATIC (3DP)?

PolyTrans|CAD+DCC performs mathematically precise CAD, DCC/Animation, GIS and BIM 3D file conversions into all key downstream 3D packages and file formats. Okino software is used and trusted throughout the world by many tens of thousands of 3D professionals in mission & production critical environments, backed by respectable personal support directly from our core development team.

PDB

If you are coming here looking for information about the Microsoft .pdb file format then this is the wrong place. Those .pdb files define a 'program database file' that contains debugging information for a compiled executable (EXE/DLL). PDB files are generated by Microsoft Compilers when an application program is compiled in debug mode.

Rather, this page describes the 'Protein Database' 3D file format which uses the .pdb file extension.

The Protein Databank (PDB) is an archive of experimentally determined three-dimensional structures of biological macromolecules, serving a global community of researchers, educators, and students. The archives contain atomic coordinates, bibliographic citations, primary and secondary structure information, as well as crystallographic structure factors and NMR experimental data.

The database is constantly updated as new structures are deposited by the international scientific community. As described on a PDB database WEB page, most of the three-dimensional macromolecular structure data in the Protein Data Bank were obtained by one of three methods: X-ray crystallography (over 80%), solution nuclear magnetic resonance (NMR) (about 16%) or theoretical modeling (2%).

The PDB file format is a text-based file format that is designed to convey information about the structure of molecules; namely organic compounds such as proteins. This information consists of atomic co-ordinates, element composition, chain and grouping characteristics and bonding information.

CADMATIC

Okino and Cadmatic have collaborated for many years to create a fluid 3D conversion pipeline from Okino's CAD importers into Cadmatic 3D Plant software. This is achieved through a custom 3D export converter module for Okino software which creates "3DP" files. Such files can then be loaded into Cadmatic's 3D plant design software.

This custom solution allows Cadmatic users to source from all primary MCAD and CAD programs, resulting in highly optimized, clean and robust 3DP files. Commonly requested source MCAD programs include SolidWorks, ProE/Creo, IGES solids, STEP solids, PARASOLID solids, DWF-3D, (for the technically best AutoCAD, NavisWorks, Revit, Inventor conversions) DXF/DWG, JT and basically all other top named MCAD programs.

The 3DP Exporter plug-in for Okino software is developed and maintained by Cadmatic. Please contact them directly to obtain the 3DP installer.

If you wish to convert from the Cadmatic 3D Plant software into other BREP solids modelling programs (such as SolidWorks, Unigraphics NX, Siemens Team Center, ProE/Creo CATIA, etc.) then please contact Cadmatic directly for their speciality methods and processes. Such processes are not provided by Okino software as its requires special processing of data from the 3D Plant software. As examples, Cadmatic 3D Plant can export JT "solids-based" files for Unigraphics NX and Siemens Team Center, while the use of a local copy of AutoCAD allows Cadmatic 3D Plant datasets to be converted into "solids" for Autodesk Inventor and other programs.

PDB import converter's overview

PolyTrans|CAD for CADMATIC

CADMATIC export converter's overview