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How to convert PDB (Protein Database) to DWF (DWFx)?

PolyTrans|CAD+DCC performs mathematically precise CAD, DCC/Animation, GIS and BIM 3D file conversions into all key downstream 3D packages and file formats. Okino software is used and trusted throughout the world by many tens of thousands of 3D professionals in mission & production critical environments, backed by respectable personal support directly from our core development team.

PDB

If you are coming here looking for information about the Microsoft .pdb file format then this is the wrong place. Those .pdb files define a 'program database file' that contains debugging information for a compiled executable (EXE/DLL). PDB files are generated by Microsoft Compilers when an application program is compiled in debug mode.

Rather, this page describes the 'Protein Database' 3D file format which uses the .pdb file extension.

The Protein Databank (PDB) is an archive of experimentally determined three-dimensional structures of biological macromolecules, serving a global community of researchers, educators, and students. The archives contain atomic coordinates, bibliographic citations, primary and secondary structure information, as well as crystallographic structure factors and NMR experimental data.

The database is constantly updated as new structures are deposited by the international scientific community. As described on a PDB database WEB page, most of the three-dimensional macromolecular structure data in the Protein Data Bank were obtained by one of three methods: X-ray crystallography (over 80%), solution nuclear magnetic resonance (NMR) (about 16%) or theoretical modeling (2%).

The PDB file format is a text-based file format that is designed to convey information about the structure of molecules; namely organic compounds such as proteins. This information consists of atomic co-ordinates, element composition, chain and grouping characteristics and bonding information.

DWF

Okino knows of the DWF file format very well as we have been involved with its evolution since the year 2000. A DWF file is nothing other than a renamed "ZIP" file which contains other internal assets such as a HOOPS HSF 3D model file and several XML files used to describe meta data and other aspects of the model. You can rename the .dwf file to .zip and then open it in any ZIP handling software.

The HSF file format was created by Ithaca Software in the mid 1980's as an efficient, light weight, compressed 3D visualization format. Thereafter it was adapted and adopted by Tech Soft 3D in the early 2000s for use by Autodesk as a "3D variation" of its prior 2D-vector-centric DWF file format (and hence how HSF became DWF). DWF/HSF is considered a "polygonal mesh" file format and not a NURBS/solids MCAD file format.

DWF attained acceptable traction after 2006 when Autodesk made it a primary conduit to export high quality 3D visualization data from its main CAD products such as AutoCAD, Navisworks, Revit and Inventor. Okino considers DWF as one of its most important non-MCAD file formats to bring in very large 3D models (such as massive oil & gas rigs, 3D plants and refineries) from these 4 aforementioned Autodesk products as well as from AVEVA PDMS software.

PDB import converter's overview

DWF export converter's overview